HL_4V49_033

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

4V49|1|AV|U|16, 4V49|1|AV|U|17, 4V49|1|AV|G|18, 4V49|1|AV|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V49_033 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.162

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V49|1|AV|C|13
4V49|1|AV|A|14
4V49|1|AV|G|15
4V49|1|AV|U|16
4V49|1|AV|U|17
4V49|1|AV|G|18
4V49|1|AV|G|19
4V49|1|AV|G|20
4V49|1|AV|A|21
4V49|1|AV|G|22

Current chains

Chain AV

tRNA-Phe

Nearby chains

Chain B0

Large subunit ribosomal RNA; LSU rRNA

Chain BD

50S ribosomal protein L5