HL_4V49_038

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V49_038 not in the Motif Atlas

Homologous match to HL_5AXM_003

Geometric discrepancy: 0.0958

The information below is about HL_5AXM_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V49|1|AW|G|53
4V49|1|AW|U|54
4V49|1|AW|U|55
4V49|1|AW|C|56
4V49|1|AW|G|57
4V49|1|AW|A|58
4V49|1|AW|U|59
4V49|1|AW|C|60
4V49|1|AW|C|61

Current chains

Chain AW

tRNA-Phe

Nearby chains

Chain B0

Large subunit ribosomal RNA; LSU rRNA

Chain BK

50S ribosomal protein L16

Chain BT

general stress protein Ctc