HL_4V49_092

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CUGACACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V49_092 not in the Motif Atlas

Homologous match to HL_7A0S_056

Geometric discrepancy: 0.2022

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V49|1|B0|C|2334
4V49|1|B0|U|2335
4V49|1|B0|G|2336
4V49|1|B0|A|2337
4V49|1|B0|C|2338
4V49|1|B0|A|2339
4V49|1|B0|C|2340
4V49|1|B0|G|2341

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BJ

50S ribosomal protein L15

Chain BU

50S ribosomal protein L27