HL_4V49_106

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

UGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V49_106 not in the Motif Atlas

Homologous match to HL_7A0S_047

Geometric discrepancy: 0.2661

The information below is about HL_7A0S_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V49|1|B0|U|3868
4V49|1|B0|G|3869
4V49|1|B0|C|3870
4V49|1|B0|A|3871
4V49|1|B0|A|3872
4V49|1|B0|G|3873

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S ribosomal protein L1P