HL_4V4A_012

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

4V4A|1|AA|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2888

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V4A|1|AA|A|462
4V4A|1|AA|C|463
4V4A|1|AA|U|464
4V4A|1|AA|C|465
4V4A|1|AA|A|466
4V4A|1|AA|U|467
4V4A|1|AA|A|468
4V4A|1|AA|C|469
4V4A|1|AA|U|470

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AP

30S ribosomal protein S16