HL_4V4A_048

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CCUUAUGCG

Length

9 nucleotides

Bulged bases

4V4A|1|B0|U|554, 4V4A|1|B0|U|555, 4V4A|1|B0|G|558

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_048 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3935

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_16651.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V4A|1|B0|C|552
4V4A|1|B0|C|553
4V4A|1|B0|U|554
4V4A|1|B0|U|555
4V4A|1|B0|A|556
4V4A|1|B0|U|557
4V4A|1|B0|G|558
4V4A|1|B0|C|559
4V4A|1|B0|G|560

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BH

50S ribosomal protein L13

Chain BP

50S ribosomal protein L21