HL_4V4A_049

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

4V4A|1|B0|C|583

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_049 not in the Motif Atlas

Geometric match to HL_3F2X_004

Geometric discrepancy: 0.2171

The information below is about HL_3F2X_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4V4A|1|B0|U|575
4V4A|1|B0|A|576
4V4A|1|B0|U|577
4V4A|1|B0|U|578
4V4A|1|B0|G|579
4V4A|1|B0|A|580
4V4A|1|B0|A|581
4V4A|1|B0|G|582
4V4A|1|B0|C|583
4V4A|1|B0|A|584

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BB

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L15

Chain BP

50S ribosomal protein L21