HL_4V4A_064

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_064 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.3051

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V4A|1|B0|G|1294
4V4A|1|B0|U|1295
4V4A|1|B0|G|1296
4V4A|1|B0|A|1297
4V4A|1|B0|G|1298
4V4A|1|B0|A|1299
4V4A|1|B0|A|1300
4V4A|1|B0|U|1301
4V4A|1|B0|C|1302

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BL

50S ribosomal protein L17

Chain BQ

50S ribosomal protein L22