HL_4V4A_068

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CUAUGGCUAUG

Length

11 nucleotides

Bulged bases

4V4A|1|B0|A|1468, 4V4A|1|B0|U|1475

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_068 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.4817

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V4A|1|B0|C|1466
4V4A|1|B0|U|1467
4V4A|1|B0|A|1468
4V4A|1|B0|U|1469
4V4A|1|B0|G|1470
4V4A|1|B0|G|1471
4V4A|1|B0|C|1472
4V4A|1|B0|U|1473
4V4A|1|B0|A|1474
4V4A|1|B0|U|1475
4V4A|1|B0|G|1476

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BL

50S ribosomal protein L17