HL_4V4A_079

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4V4A|1|B0|U|1938

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_079 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.2711

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4V4A|1|B0|G|1932
4V4A|1|B0|G|1933
4V4A|1|B0|U|1934
4V4A|1|B0|A|1935
4V4A|1|B0|A|1936
4V4A|1|B0|G|1937
4V4A|1|B0|U|1938
4V4A|1|B0|U|1939
4V4A|1|B0|C|1940

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BI

50S ribosomal protein L14