HL_4V4A_090

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

4V4A|1|B0|G|2508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_090 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.346

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4V4A|1|B0|C|2506
4V4A|1|B0|U|2507
4V4A|1|B0|G|2508
4V4A|1|B0|A|2509
4V4A|1|B0|A|2510
4V4A|1|B0|G|2511
4V4A|1|B0|A|2512
4V4A|1|B0|A|2513
4V4A|1|B0|G|2514
4V4A|1|B0|G|2515

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BE

50S ribosomal protein L6