HL_4V4A_111

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GUCAAGAUUC

Length

10 nucleotides

Bulged bases

4V4A|1|B0|U|1409, 4V4A|1|B0|U|1410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_111 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.3733

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4A|1|B0|G|1402
4V4A|1|B0|U|1403
4V4A|1|B0|C|1404
4V4A|1|B0|A|1405
4V4A|1|B0|A|1406
4V4A|1|B0|G|1407
4V4A|1|B0|A|1408
4V4A|1|B0|U|1409
4V4A|1|B0|U|1410
4V4A|1|B0|C|1411

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BR

50S ribosomal protein L23