HL_4V4G_052

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_052 not in the Motif Atlas

Homologous match to HL_5J7L_152

Geometric discrepancy: 0.2679

The information below is about HL_5J7L_152

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V4G|1|BB|C|640
4V4G|1|BB|G|641
4V4G|1|BB|A|642
4V4G|1|BB|A|643
4V4G|1|BB|A|644
4V4G|1|BB|G|645

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S ribosomal protein L35

Chain BM

50S ribosomal protein L15