HL_4V4G_090

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

4V4G|1|BB|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_090 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.405

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

4V4G|1|BB|U|2507
4V4G|1|BB|G|2508
4V4G|1|BB|A|2509
4V4G|1|BB|A|2510
4V4G|1|BB|G|2511
4V4G|1|BB|A|2512
4V4G|1|BB|A|2513
4V4G|1|BB|G|2514

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B6

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BL

50S ribosomal protein L14