HL_4V4G_106

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

4V4G|1|CA|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_106 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.4437

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V4G|1|CA|C|320
4V4G|1|CA|A|321
4V4G|1|CA|C|322
4V4G|1|CA|U|323
4V4G|1|CA|G|324
4V4G|1|CA|A|325
4V4G|1|CA|G|326
4V4G|1|CA|A|327
4V4G|1|CA|C|328
4V4G|1|CA|A|329
4V4G|1|CA|C|330
4V4G|1|CA|G|331
4V4G|1|CA|G|332
4V4G|1|CA|G|333

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20