HL_4V4G_283

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4V4G|1|FB|U|2385, 4V4G|1|FB|A|2391

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_283 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.4477

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V4G|1|FB|C|2383
4V4G|1|FB|G|2384
4V4G|1|FB|U|2385
4V4G|1|FB|G|2386
4V4G|1|FB|U|2387
4V4G|1|FB|G|2388
4V4G|1|FB|G|2389
4V4G|1|FB|A|2390
4V4G|1|FB|A|2391
4V4G|1|FB|G|2392

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain FM

50S ribosomal protein L15