HL_4V4G_310

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

4V4G|1|GA|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_310 not in the Motif Atlas

Homologous match to HL_6CZR_088

Geometric discrepancy: 0.371

The information below is about HL_6CZR_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

4V4G|1|GA|G|786
4V4G|1|GA|A|787
4V4G|1|GA|U|788
4V4G|1|GA|U|789
4V4G|1|GA|A|790
4V4G|1|GA|G|791
4V4G|1|GA|A|792
4V4G|1|GA|U|793
4V4G|1|GA|A|794
4V4G|1|GA|C|795
4V4G|1|GA|C|796

Current chains

Chain GA

16S ribosomal RNA

Nearby chains

Chain GK

30S ribosomal protein S11

Chain Ga

protein Y

Chain HB

Large subunit ribosomal RNA; LSU rRNA