HL_4V4G_335

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GCGGCGAGC

Length

9 nucleotides

Bulged bases

4V4G|1|HB|G|225, 4V4G|1|HB|C|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_335 not in the Motif Atlas

Geometric match to HL_8P9A_133

Geometric discrepancy: 0.3937

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4G|1|HB|G|222
4V4G|1|HB|C|223
4V4G|1|HB|G|224
4V4G|1|HB|G|225
4V4G|1|HB|C|226
4V4G|1|HB|G|227
4V4G|1|HB|A|228
4V4G|1|HB|G|229
4V4G|1|HB|C|230

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain H1

50S ribosomal protein L31

Chain H5

50S ribosomal protein L35

Chain HM

50S ribosomal protein L15