HL_4V4G_368

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

4V4G|1|HB|A|1771, 4V4G|1|HB|C|1772, 4V4G|1|HB|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_368 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.4739

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60266.1

Basepair signature

cWW-cWW-tWH-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V4G|1|HB|G|1767
4V4G|1|HB|U|1768
4V4G|1|HB|U|1769
4V4G|1|HB|U|1770
4V4G|1|HB|A|1771
4V4G|1|HB|C|1772
4V4G|1|HB|C|1773
4V4G|1|HB|A|1774
4V4G|1|HB|A|1775
4V4G|1|HB|A|1776
4V4G|1|HB|A|1777
4V4G|1|HB|U|1778
4V4G|1|HB|C|1779

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain HD

50S ribosomal protein L2