HL_4V4G_369

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4V4G|1|HB|A|1799, 4V4G|1|HB|A|1800, 4V4G|1|HB|C|1801, 4V4G|1|HB|A|1802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_369 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2943

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V4G|1|HB|C|1797
4V4G|1|HB|G|1798
4V4G|1|HB|A|1799
4V4G|1|HB|A|1800
4V4G|1|HB|C|1801
4V4G|1|HB|A|1802
4V4G|1|HB|G|1803

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain H1

50S ribosomal protein L31

Chain HD

50S ribosomal protein L2