HL_4V4G_400

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V4G|1|IA|A|344, 4V4G|1|IA|C|345, 4V4G|1|IA|G|346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_400 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.2357

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

4V4G|1|IA|C|342
4V4G|1|IA|U|343
4V4G|1|IA|A|344
4V4G|1|IA|C|345
4V4G|1|IA|G|346
4V4G|1|IA|G|347

Current chains

Chain IA

16S ribosomal RNA

Nearby chains

Chain IT

30S ribosomal protein S20

Chain JL

50S ribosomal protein L14

Chain JQ

50S ribosomal protein L19