HL_4V4G_421

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GAUCAGCCAUGC

Length

12 nucleotides

Bulged bases

4V4G|1|IA|C|1362, 4V4G|1|IA|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_421 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.3693

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V4G|1|IA|G|1356
4V4G|1|IA|A|1357
4V4G|1|IA|U|1358
4V4G|1|IA|C|1359
4V4G|1|IA|A|1360
4V4G|1|IA|G|1361
4V4G|1|IA|C|2361
4V4G|1|IA|C|1362
4V4G|1|IA|A|1363
4V4G|1|IA|U|1364
4V4G|1|IA|G|1365
4V4G|1|IA|C|1366

Current chains

Chain IA

16S ribosomal RNA

Nearby chains

Chain II

30S ribosomal protein S9

Chain IJ

30S ribosomal protein S10

Chain IN

30S ribosomal protein S14