HL_4V4G_474

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

4V4G|1|JB|A|2247, 4V4G|1|JB|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_474 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.4646

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V4G|1|JB|C|2243
4V4G|1|JB|C|2244
4V4G|1|JB|A|2245
4V4G|1|JB|A|2246
4V4G|1|JB|A|2247
4V4G|1|JB|A|2248
4V4G|1|JB|U|2249
4V4G|1|JB|G|2250
4V4G|1|JB|U|2251
4V4G|1|JB|A|2252
4V4G|1|JB|A|2253
4V4G|1|JB|C|2254
4V4G|1|JB|G|2255

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain JN

50S ribosomal protein L16

Chain JX

50S ribosomal protein L27