HL_4V4G_482

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_482 not in the Motif Atlas

Homologous match to HL_9DFE_060

Geometric discrepancy: 0.2432

The information below is about HL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V4G|1|JB|C|2530
4V4G|1|JB|U|2531
4V4G|1|JB|G|2532
4V4G|1|JB|U|2533
4V4G|1|JB|U|2534
4V4G|1|JB|C|2535
4V4G|1|JB|G|2536

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains