HL_4V4G_522

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

4V4G|1|CA|C|526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_522 not in the Motif Atlas

Homologous match to HL_4LFB_033

Geometric discrepancy: 0.4105

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V4G|1|CA|C|522
4V4G|1|CA|A|523
4V4G|1|CA|G|524
4V4G|1|CA|C|525
4V4G|1|CA|C|526
4V4G|1|CA|G|527

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S ribosomal protein S12