HL_4V4G_557

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_557 not in the Motif Atlas

Homologous match to HL_7A0S_029

Geometric discrepancy: 0.3742

The information below is about HL_7A0S_029

Detailed Annotation

GNRA related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V4G|1|FB|C|1103
4V4G|1|FB|G|1104
4V4G|1|FB|U|1105
4V4G|1|FB|A|1106
4V4G|1|FB|A|1107
4V4G|1|FB|U|1108
4V4G|1|FB|A|1109
4V4G|1|FB|G|1110

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain F6

50S ribosomal protein L36

Chain FH

50S ribosomal protein L6

Chain FJ

50S ribosomal protein L11