HL_4V4H_050

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4V4H|1|BB|U|546, 4V4H|1|BB|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4H_050 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.2873

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V4H|1|BB|G|543
4V4H|1|BB|C|544
4V4H|1|BB|U|545
4V4H|1|BB|U|546
4V4H|1|BB|A|547
4V4H|1|BB|G|548
4V4H|1|BB|G|549
4V4H|1|BB|C|550

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BJ

50S RIBOSOMAL PROTEIN L13

Chain BR

50S RIBOSOMAL PROTEIN L21