HL_4V4H_059

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GCAACAACC

Length

9 nucleotides

Bulged bases

4V4H|1|BB|A|878

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4H_059 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3306

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V4H|1|BB|G|875
4V4H|1|BB|C|876
4V4H|1|BB|A|877
4V4H|1|BB|A|878
4V4H|1|BB|C|898
4V4H|1|BB|A|899
4V4H|1|BB|A|900
4V4H|1|BB|C|901
4V4H|1|BB|C|902

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BM

50S RIBOSOMAL PROTEIN L16