HL_4V4H_163

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

4V4H|1|DB|U|958, 4V4H|1|DB|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4H_163 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1447

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V4H|1|DB|U|955
4V4H|1|DB|G|956
4V4H|1|DB|C|957
4V4H|1|DB|U|958
4V4H|1|DB|A|959
4V4H|1|DB|A|960
4V4H|1|DB|C|961
4V4H|1|DB|G|962

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DA

5S ribosomal RNA; 5S rRNA

Chain DM

50S RIBOSOMAL PROTEIN L16