HL_4V4H_188

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

4V4H|1|DB|C|2145, 4V4H|1|DB|A|2147, 4V4H|1|DB|G|2148

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4H_188 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.162

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V4H|1|DB|A|2142
4V4H|1|DB|C|2143
4V4H|1|DB|G|2144
4V4H|1|DB|C|2145
4V4H|1|DB|C|2146
4V4H|1|DB|A|2147
4V4H|1|DB|G|2148
4V4H|1|DB|U|2149

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain CK

30S RIBOSOMAL PROTEIN S11