HL_4V4H_190

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V4H|1|DB|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4H_190 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1103

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V4H|1|DB|C|2248
4V4H|1|DB|U|2249
4V4H|1|DB|G|2250
4V4H|1|DB|G|2251
4V4H|1|DB|G|2252
4V4H|1|DB|G|2253
4V4H|1|DB|C|2254
4V4H|1|DB|G|2255
4V4H|1|DB|G|2256

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DM

50S RIBOSOMAL PROTEIN L16

Chain DW

50S RIBOSOMAL PROTEIN L27