HL_4V4I_009

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V4I|1|w|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4I_009 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.152

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V4I|1|w|G|194
4V4I|1|w|A|195
4V4I|1|w|A|196
4V4I|1|w|A|197
4V4I|1|w|C|198
4V4I|1|w|A|199
4V4I|1|w|U|200
4V4I|1|w|C|201

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28