4V4I Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V4I_001 | 1/0/13:22 | No text annotation Not in a motif group | homologous HL_3KFU_004 NA | |
| HL_4V4I_002 | 1/0/30:40 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
| HL_4V4I_003 | 1/0/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_6UFG_008 HL_41998.2 | |
| HL_4V4I_004 | 1/w/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 NA | |
| HL_4V4I_005 | 1/w/87:95 | No text annotation Not in a motif group | homologous HL_4WF9_002 HL_96598.2 | |
| HL_4V4I_006 | 1/w/123:128 | No text annotation Not in a motif group | homologous HL_7A0S_003 HL_70546.2 | |
| HL_4V4I_007 | 1/w/137B:141B | No text annotation Not in a motif group | ||
| HL_4V4I_008 | 1/w/155:171 | No text annotation Not in a motif group | ||
| HL_4V4I_009 | 1/w/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.3 | |
| HL_4V4I_011 | 1/w/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 NA | |
| HL_4V4I_012 | 1/w/270K:270Q | No text annotation Not in a motif group | ||
| HL_4V4I_013 | 1/w/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_41998.2 | |
| HL_4V4I_014 | 1/w/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_70546.2 | |
| HL_4V4I_015 | 1/w/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 NA | |
| HL_4V4I_016 | 1/w/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 NA | |
| HL_4V4I_017 | 1/w/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 NA | |
| HL_4V4I_018 | 1/w/462:467 | No text annotation Not in a motif group | homologous HL_7A0S_015 HL_85603.1 | |
| HL_4V4I_019 | 1/w/487:493 | No text annotation Not in a motif group | ||
| HL_4V4I_020 | 1/w/544:549 | GNRA Not in a motif group | geometric HL_5M0J_001 HL_85603.1 | |
| HL_4V4I_021 | 1/w/566:575 | No text annotation Not in a motif group | homologous HL_7A0S_018 HL_41998.2 | |
| HL_4V4I_022 | 1/w/611:617 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_29960.1 | |
| HL_4V4I_023 | 1/w/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 NA | |
| HL_4V4I_024 | 1/w/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 NA | |
| HL_4V4I_025 | 1/w/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.3 | |
| HL_4V4I_026 | 1/w/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 NA | |
| HL_4V4I_027 | 1/w/779:785 | No text annotation Not in a motif group | ||
| HL_4V4I_028 | 1/w/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_55195.1 | |
| HL_4V4I_029 | 1/w/884:892 | No text annotation Not in a motif group | ||
| HL_4V4I_030 | 1/w/955:962 | No text annotation Not in a motif group | homologous HL_7A0S_026 HL_85603.1 | |
| HL_4V4I_031 | 1/w/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 NA | |
| HL_4V4I_032 | 1/w/1065:1073 | GNRA Not in a motif group | geometric HL_4V9F_036 HL_85603.1 | |
| HL_4V4I_033 | 1/w/1092:1099 | No text annotation Not in a motif group | homologous HL_7RQB_030 NA | |
| HL_4V4I_034 | 1/w/1171:1178 | No text annotation Not in a motif group | ||
| HL_4V4I_035 | 1/w/1222:1227 | Other HL Not in a motif group | geometric HL_2CZJ_007 HL_53845.3 | |
| HL_4V4I_036 | 1/w/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_41998.2 | |
| HL_4V4I_037 | 1/w/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 NA | |
| HL_4V4I_038 | 1/w/1363:1368 | Other HL Not in a motif group | homologous HL_4WF9_034 HL_87030.3 | |
| HL_4V4I_039 | 1/w/1389:1398 | No text annotation Not in a motif group | ||
| HL_4V4I_040 | 1/w/1450:1461 | No text annotation Not in a motif group | ||
| HL_4V4I_041 | 1/w/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 NA | |
| HL_4V4I_042 | 1/w/1533:1538 | No text annotation Not in a motif group | ||
| HL_4V4I_043 | 1/w/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 NA | |
| HL_4V4I_044 | 1/w/1612:1619 | No text annotation Not in a motif group | homologous HL_7A0S_040 HL_64430.3 | |
| HL_4V4I_045 | 1/w/1630:1636 | No text annotation Not in a motif group | ||
| HL_4V4I_046 | 1/w/1691:1696 | UNCG Not in a motif group | geometric HL_1NBS_006 HL_29960.1 | |
| HL_4V4I_047 | 1/w/1726:1734 | No text annotation Not in a motif group | ||
| HL_4V4I_048 | 1/w/1752:1756 | No text annotation Not in a motif group | homologous HL_7A0S_044 HL_76539.6 | |
| HL_4V4I_049 | 1/w/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.6 | |
| HL_4V4I_050 | 1/w/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 NA | |
| HL_4V4I_051 | 1/w/1864:1878 | No text annotation Not in a motif group | homologous HL_7A0S_047 HL_85603.1 | |
| HL_4V4I_052 | 1/w/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4V4I_053 | 1/w/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 NA | |
| HL_4V4I_054 | 1/w/2027:2036 | No text annotation Not in a motif group | homologous HL_7A0S_049 HL_90642.7 | |
| HL_4V4I_055 | 1/w/2143:2148 | No text annotation Not in a motif group | geometric HL_3OXE_002 HL_85603.1 | |
| HL_4V4I_056 | 1/w/2209:2215 | No text annotation Not in a motif group | ||
| HL_4V4I_057 | 1/w/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4V4I_058 | 1/w/2264:2276 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.7 | |
| HL_4V4I_059 | 1/w/2304:2312 | No text annotation Not in a motif group | ||
| HL_4V4I_060 | 1/w/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 NA | |
| HL_4V4I_061 | 1/w/2355:2362 | No text annotation Not in a motif group | homologous HL_7A0S_056 HL_65167.1 | |
| HL_4V4I_062 | 1/w/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 NA | |
| HL_4V4I_063 | 1/w/2404:2413 | No text annotation Not in a motif group | homologous HL_4WF9_055 HL_40210.3 | |
| HL_4V4I_064 | 1/w/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.3 | |
| HL_4V4I_065 | 1/w/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_91104.2 | |
| HL_4V4I_066 | 1/w/2550:2558 | No text annotation Not in a motif group | ||
| HL_4V4I_067 | 1/w/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_85603.1 | |
| HL_4V4I_068 | 1/w/2658:2663 | GNRA Not in a motif group | homologous HL_4WF9_060 HL_85603.1 | |
| HL_4V4I_069 | 1/w/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 NA | |
| HL_4V4I_070 | 1/w/2745:2759 | No text annotation Not in a motif group | homologous HL_4WF9_062 HL_56677.8 | |
| HL_4V4I_071 | 1/w/2794:2802 | GNRA Not in a motif group | geometric HL_4ZT0_004 HL_85603.1 | |
| HL_4V4I_072 | 1/w/2819:2827 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_64690.2 | |
| HL_4V4I_073 | 1/w/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_85603.1 | |
| HL_4V4I_074 | 1/x/38:44 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.5 | |
| HL_4V4I_075 | 1/x/86:90 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_85603.1 | |
| HL_4V4I_076 | 1/y/12:22 | No text annotation Not in a motif group | homologous HL_6CZR_072 HL_89881.2 | |
| HL_4V4I_077 | 1/y/81:88 | No text annotation Not in a motif group | homologous HL_4LFB_002 HL_40210.3 | |
| HL_4V4I_078 | 1/y/102C:103B | No text annotation Not in a motif group | ||
| HL_4V4I_079 | 1/y/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_85603.1 | |
| HL_4V4I_080 | 1/y/186G:191A | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_61849.1 | |
| HL_4V4I_081 | 1/y/201:216 | No text annotation Not in a motif group | ||
| HL_4V4I_082 | 1/y/259:267 | No text annotation Not in a motif group | homologous HL_6CZR_077 HL_69023.3 | |
| HL_4V4I_083 | 1/y/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_85603.1 | |
| HL_4V4I_084 | 1/y/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V4I_085 | 1/y/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_29960.1 | |
| HL_4V4I_086 | 1/y/379:384 | No text annotation Not in a motif group | geometric HL_5J7L_179 HL_85603.1 | |
| HL_4V4I_087 | 1/y/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_29960.1 | |
| HL_4V4I_088 | 1/y/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_85603.1 | |
| HL_4V4I_089 | 1/y/521:528 | No text annotation Not in a motif group | homologous HL_5J7L_013 NA | |
| HL_4V4I_090 | 1/y/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.3 | |
| HL_4V4I_091 | 1/y/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.2 | |
| HL_4V4I_092 | 1/y/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.3 | |
| HL_4V4I_093 | 1/y/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.2 | |
| HL_4V4I_094 | 1/y/838:848 | No text annotation Not in a motif group | ||
| HL_4V4I_095 | 1/y/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_85603.1 | |
| HL_4V4I_096 | 1/y/897:902 | GNRA Not in a motif group | homologous HL_6CZR_091 HL_85603.1 | |
| HL_4V4I_097 | 1/y/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V4I_098 | 1/y/1012:1017 | No text annotation Not in a motif group | ||
| HL_4V4I_099 | 1/y/1027:1034 | No text annotation Not in a motif group | ||
| HL_4V4I_100 | 1/y/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_85603.1 | |
| HL_4V4I_101 | 1/y/1089:1096 | No text annotation Not in a motif group | homologous HL_6CZR_096 HL_71554.2 | |
| HL_4V4I_102 | 1/y/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_63154.1 | |
| HL_4V4I_103 | 1/y/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_85603.1 | |
| HL_4V4I_104 | 1/y/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_85603.1 | |
| HL_4V4I_105 | 1/y/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_41998.2 | |
| HL_4V4I_106 | 1/y/1356:1366 | No text annotation Not in a motif group | ||
| HL_4V4I_107 | 1/y/1449:1454 | No text annotation Not in a motif group | ||
| HL_4V4I_108 | 1/y/1515:1520 | No text annotation Not in a motif group | homologous HL_5J7L_031 NA | |
| HL_4V4I_109 | 1/z/13:22 | No text annotation Not in a motif group | homologous HL_3WFS_001 NA | |
| HL_4V4I_110 | 1/z/30:40 | No text annotation Not in a motif group | homologous HL_1B23_002 NA | |
| HL_4V4I_111 | 1/z/53:61 | No text annotation Not in a motif group | homologous HL_1B23_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V4I_010 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V4I_001 | 1/w/24:30, 1/w/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5TBW_015 IL_66414.7 | |
| IL_4V4I_002 | 1/w/36:37, 1/w/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.7 | |
| IL_4V4I_003 | 1/w/43:44, 1/w/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.5 | |
| IL_4V4I_004 | 1/w/81:85, 1/w/97:105 | Kink-turn Not in a motif group | homologous IL_7A0S_004 IL_45067.3 | |
| IL_4V4I_005 | 1/w/122:123, 1/w/128:129 | No text annotation Not in a motif group | ||
| IL_4V4I_006 | 1/w/134:135, 1/w/144:145 | No text annotation Not in a motif group | ||
| IL_4V4I_007 | 1/w/154:155, 1/w/171:172 | No text annotation Not in a motif group | ||
| IL_4V4I_008 | 1/w/183:184, 1/w/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.5 | |
| IL_4V4I_009 | 1/w/188:194, 1/w/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 NA | |
| IL_4V4I_010 | 1/w/239:245, 1/w/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 NA | |
| IL_4V4I_012 | 1/w/273A:273B, 1/w/363F:364 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.5 | |
| IL_4V4I_013 | 1/w/273G:278, 1/w/362:363A | No text annotation Not in a motif group | ||
| IL_4V4I_014 | 1/w/280:284, 1/w/356:360 | tSH-tHW-tHS Not in a motif group | geometric IL_6CZR_145 IL_17136.2 | |
| IL_4V4I_015 | 1/w/288:291, 1/w/349:352 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.4 | |
| IL_4V4I_016 | 1/w/292:295, 1/w/343:348 | No text annotation Not in a motif group | ||
| IL_4V4I_017 | 1/w/481:484, 1/w/496:509 | No text annotation Not in a motif group | geometric IL_7A0S_009 IL_60992.7 | |
| IL_4V4I_018 | 1/w/564:566, 1/w/575:577 | No text annotation Not in a motif group | homologous IL_7RQB_015 NA | |
| IL_4V4I_019 | 1/w/606:609B, 1/w/618B:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 NA | |
| IL_4V4I_020 | 1/w/672:674, 1/w/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 NA | |
| IL_4V4I_021 | 1/w/674:678, 1/w/799:806 | No text annotation Not in a motif group | geometric IL_7A0S_015 IL_17470.7 | |
| IL_4V4I_022 | 1/w/697:698, 1/w/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 NA | |
| IL_4V4I_023 | 1/w/702:703, 1/w/728:730 | Single bulged G Not in a motif group | homologous IL_4WF9_023 IL_00225.4 | |
| IL_4V4I_024 | 1/w/703:707, 1/w/724:728 | Triple sheared Not in a motif group | geometric IL_5J7L_310 IL_96141.2 | |
| IL_4V4I_025 | 1/w/738:741, 1/w/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 NA | |
| IL_4V4I_026 | 1/w/775:778, 1/w/786:791 | No text annotation Not in a motif group | ||
| IL_4V4I_027 | 1/w/837:838, 1/w/940:942 | Single stack bend Not in a motif group | homologous IL_5J7L_266 IL_92001.2 | |
| IL_4V4I_028 | 1/w/844:846, 1/w/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 NA | |
| IL_4V4I_029 | 1/w/846:850, 1/w/928:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 NA | |
| IL_4V4I_030 | 1/w/858:862, 1/w/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 NA | |
| IL_4V4I_031 | 1/w/862:863, 1/w/913:915 | Minor groove platform Not in a motif group | homologous IL_7A0S_028 IL_42622.5 | |
| IL_4V4I_032 | 1/w/864:868, 1/w/909:912 | No text annotation Not in a motif group | ||
| IL_4V4I_033 | 1/w/875:877, 1/w/900:902 | No text annotation Not in a motif group | geometric IL_5ZTM_001 IL_86319.3 | |
| IL_4V4I_034 | 1/w/877:879, 1/w/898:900 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_86319.3 | |
| IL_4V4I_036 | 1/w/952:954, 1/w/963:965 | No text annotation Not in a motif group | homologous IL_7A0S_031 IL_86319.3 | |
| IL_4V4I_037 | 1/w/994:996, 1/w/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 NA | |
| IL_4V4I_038 | 1/w/998:1002, 1/w/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.3 | |
| IL_4V4I_039 | 1/w/1004:1011, 1/w/1150:1151 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_002 IL_59677.3 | |
| IL_4V4I_040 | 1/w/1011:1013, 1/w/1149:1150 | Single bulged U Not in a motif group | homologous IL_7A0S_035 IL_83039.17 | |
| IL_4V4I_041 | 1/w/1018:1024, 1/w/1140:1144 | No text annotation Not in a motif group | ||
| IL_4V4I_042 | 1/w/1024:1030, 1/w/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 NA | |
| IL_4V4I_043 | 1/w/1031:1034, 1/w/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_43275.2 | |
| IL_4V4I_044 | 1/w/1043:1052, 1/w/1107:1112 | No text annotation Not in a motif group | ||
| IL_4V4I_045 | 1/w/1059:1062, 1/w/1076:1079 | No text annotation Not in a motif group | homologous IL_5J7L_285 IL_23544.2 | |
| IL_4V4I_046 | 1/w/1087:1091, 1/w/1100:1102 | No text annotation Not in a motif group | homologous IL_7RQB_044 NA | |
| IL_4V4I_047 | 1/w/1197:1198, 1/w/1247:1249 | No text annotation Not in a motif group | ||
| IL_4V4I_048 | 1/w/1202:1206, 1/w/1240:1243 | No text annotation Not in a motif group | ||
| IL_4V4I_049 | 1/w/1208:1215, 1/w/1234:1238 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_70923.3 | |
| IL_4V4I_050 | 1/w/1219:1221, 1/w/1229:1230 | No text annotation Not in a motif group | ||
| IL_4V4I_051 | 1/w/1221:1222, 1/w/1227:1229 | No text annotation Not in a motif group | ||
| IL_4V4I_052 | 1/w/1262:1269, 1/w/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 NA | |
| IL_4V4I_053 | 1/w/1310:1313, 1/w/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.3 | |
| IL_4V4I_054 | 1/w/1319:1323, 1/w/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 NA | |
| IL_4V4I_055 | 1/w/1351:1355, 1/w/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 NA | |
| IL_4V4I_056 | 1/w/1357:1361, 1/w/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.2 | |
| IL_4V4I_057 | 1/w/1415:1416, 1/w/1582:1587 | No text annotation Not in a motif group | ||
| IL_4V4I_058 | 1/w/1416:1421, 1/w/1577:1582 | No text annotation Not in a motif group | ||
| IL_4V4I_059 | 1/w/1432:1435, 1/w/1557:1561 | No text annotation Not in a motif group | ||
| IL_4V4I_060 | 1/w/1437:1440, 1/w/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 NA | |
| IL_4V4I_061 | 1/w/1468:1473, 1/w/1520:1524 | No text annotation Not in a motif group | ||
| IL_4V4I_062 | 1/w/1481:1483, 1/w/1506:1512 | No text annotation Not in a motif group | ||
| IL_4V4I_063 | 1/w/1489:1491, 1/w/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 NA | |
| IL_4V4I_064 | 1/w/1527:1531, 1/w/1540:1544 | No text annotation Not in a motif group | ||
| IL_4V4I_065 | 1/w/1651:1656, 1/w/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 NA | |
| IL_4V4I_066 | 1/w/1663:1665, 1/w/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.8 | |
| IL_4V4I_067 | 1/w/1666:1669, 1/w/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4WF9_049 IL_50694.3 | |
| IL_4V4I_068 | 1/w/1669:1674, 1/w/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 NA | |
| IL_4V4I_069 | 1/w/1686:1691, 1/w/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_5J7L_308 IL_65969.3 | |
| IL_4V4I_070 | 1/w/1770:1771, 1/w/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 NA | |
| IL_4V4I_071 | 1/w/1798:1804, 1/w/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.4 | |
| IL_4V4I_072 | 1/w/1837:1840, 1/w/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_7RQB_071 NA | |
| IL_4V4I_073 | 1/w/1840:1843, 1/w/1897:1902 | No text annotation Not in a motif group | ||
| IL_4V4I_074 | 1/w/1846:1849, 1/w/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 NA | |
| IL_4V4I_075 | 1/w/1851:1855, 1/w/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 NA | |
| IL_4V4I_076 | 1/w/1856:1860, 1/w/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 NA | |
| IL_4V4I_077 | 1/w/1933:1934, 1/w/1964:1967 | No text annotation Not in a motif group | geometric IL_4WF9_076 IL_59677.3 | |
| IL_4V4I_078 | 1/w/1934:1945, 1/w/1961:1964 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_4V4I_080 | 1/w/2054:2056, 1/w/2612:2615 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_4V4I_081 | 1/w/2067:2069, 1/w/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 NA | |
| IL_4V4I_082 | 1/w/2070:2071, 1/w/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.5 | |
| IL_4V4I_083 | 1/w/2081:2083, 1/w/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 NA | |
| IL_4V4I_084 | 1/w/2085:2087, 1/w/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_86319.3 | |
| IL_4V4I_085 | 1/w/2108:2110, 1/w/2179:2181 | No text annotation Not in a motif group | homologous IL_7RQB_084 NA | |
| IL_4V4I_086 | 1/w/2110:2120, 1/w/2178:2179 | No text annotation Not in a motif group | ||
| IL_4V4I_087 | 1/w/2124:2127, 1/w/2161:2174 | No text annotation Not in a motif group | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4V4I_088 | 1/w/2129:2136, 1/w/2155:2159 | No text annotation Not in a motif group | ||
| IL_4V4I_089 | 1/w/2297:2299, 1/w/2317:2321 | No text annotation Not in a motif group | homologous IL_5J7L_332 IL_56105.1 | |
| IL_4V4I_090 | 1/w/2350:2353, 1/w/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 NA | |
| IL_4V4I_091 | 1/w/2401:2403, 1/w/2414:2415 | No text annotation Not in a motif group | ||
| IL_4V4I_092 | 1/w/2454:2455, 1/w/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 NA | |
| IL_4V4I_093 | 1/w/2457:2459, 1/w/2493:2494 | Major groove platform Not in a motif group | geometric IL_7A0S_085 IL_27635.4 | |
| IL_4V4I_094 | 1/w/2459:2461, 1/w/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_92788.3 | |
| IL_4V4I_095 | 1/w/2466:2470, 1/w/2480:2484 | Triple sheared Not in a motif group | homologous IL_7A0S_087 IL_56467.9 | |
| IL_4V4I_096 | 1/w/2507:2508, 1/w/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 NA | |
| IL_4V4I_097 | 1/w/2510:2512, 1/w/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 NA | |
| IL_4V4I_098 | 1/w/2512:2513, 1/w/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.3 | |
| IL_4V4I_099 | 1/w/2522:2523, 1/w/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.4 | |
| IL_4V4I_100 | 1/w/2591:2592, 1/w/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 NA | |
| IL_4V4I_101 | 1/w/2636:2640, 1/w/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7A0S_093 IL_04638.2 | |
| IL_4V4I_102 | 1/w/2652:2658, 1/w/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 NA | |
| IL_4V4I_103 | 1/w/2680:2684, 1/w/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.7 | |
| IL_4V4I_104 | 1/w/2687:2691, 1/w/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 NA | |
| IL_4V4I_105 | 1/w/2695:2696, 1/w/2711:2714 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_136 IL_59677.3 | |
| IL_4V4I_106 | 1/w/2737:2742, 1/w/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.6 | |
| IL_4V4I_107 | 1/w/2838:2839, 1/w/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 NA | |
| IL_4V4I_108 | 1/w/2843:2845, 1/w/2871:2874 | Decoding loop related Not in a motif group | homologous IL_7A0S_100 IL_02284.7 | |
| IL_4V4I_109 | 1/w/2847:2853, 1/w/2864:2869 | No text annotation Not in a motif group | ||
| IL_4V4I_110 | 1/x/17:18, 1/x/65:67 | Major groove intercalation Not in a motif group | homologous IL_4V9F_101 IL_37497.7 | |
| IL_4V4I_111 | 1/x/23:28, 1/x/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_4V4I_112 | 1/x/30:31, 1/x/51:54 | No text annotation Not in a motif group | ||
| IL_4V4I_113 | 1/x/34:38, 1/x/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_4V9F_104 IL_58103.7 | |
| IL_4V4I_114 | 1/x/71:79, 1/x/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 NA | |
| IL_4V4I_115 | 1/y/30:32, 1/y/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.4 | |
| IL_4V4I_116 | 1/y/44:45, 1/y/396:398 | Single bulged A Not in a motif group | homologous IL_6CZR_114 IL_37497.7 | |
| IL_4V4I_117 | 1/y/47:53, 1/y/358:361 | No text annotation Not in a motif group | ||
| IL_4V4I_118 | 1/y/54:56, 1/y/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_80097.2 | |
| IL_4V4I_119 | 1/y/67:69, 1/y/99:102 | No text annotation Not in a motif group | homologous IL_6CZR_118 IL_86319.3 | |
| IL_4V4I_120 | 1/y/129A:131, 1/y/231:232 | No text annotation Not in a motif group | ||
| IL_4V4I_121 | 1/y/132:136, 1/y/227:230 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_001 IL_30621.4 | |
| IL_4V4I_123 | 1/y/148:153, 1/y/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4V4I_124 | 1/y/186A:186C, 1/y/191E:191G | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_86319.3 | |
| IL_4V4I_125 | 1/y/242:247, 1/y/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.3 | |
| IL_4V4I_126 | 1/y/249:252, 1/y/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_4V4I_127 | 1/y/292:293, 1/y/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_4V4I_128 | 1/y/367:369, 1/y/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.17 | |
| IL_4V4I_129 | 1/y/371:375, 1/y/389:390 | C-loop Not in a motif group | homologous IL_6CZR_127 IL_75255.1 | |
| IL_4V4I_130 | 1/y/375:376, 1/y/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.4 | |
| IL_4V4I_131 | 1/y/409:417, 1/y/426:433 | No text annotation Not in a motif group | homologous IL_6CZR_129 IL_58819.1 | |
| IL_4V4I_132 | 1/y/446:450, 1/y/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_4V4I_133 | 1/y/450:455, 1/y/477:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_4V4I_134 | 1/y/504:511, 1/y/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.8 | |
| IL_4V4I_135 | 1/y/515:521, 1/y/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_4V4I_136 | 1/y/569:575, 1/y/880:881 | No text annotation Not in a motif group | homologous IL_6CZR_134 IL_38186.1 | |
| IL_4V4I_137 | 1/y/580:584, 1/y/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.2 | |
| IL_4V4I_138 | 1/y/594:596, 1/y/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.4 | |
| IL_4V4I_139 | 1/y/597:598, 1/y/640:643 | No text annotation Not in a motif group | ||
| IL_4V4I_140 | 1/y/605:613, 1/y/627:633 | No text annotation Not in a motif group | ||
| IL_4V4I_141 | 1/y/654:656, 1/y/750:754 | No text annotation Not in a motif group | ||
| IL_4V4I_142 | 1/y/657:658, 1/y/747:749 | Major groove platform Not in a motif group | homologous IL_6CZR_140 IL_27635.4 | |
| IL_4V4I_143 | 1/y/662:666, 1/y/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_4V4I_144 | 1/y/673:677, 1/y/713:717 | No text annotation Not in a motif group | ||
| IL_4V4I_145 | 1/y/683:688, 1/y/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4V4I_146 | 1/y/774:778, 1/y/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_4V4I_147 | 1/y/779:783, 1/y/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_145 IL_17136.2 | |
| IL_4V4I_148 | 1/y/887:894, 1/y/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_4V4I_149 | 1/y/922:923, 1/y/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.7 | |
| IL_4V4I_150 | 1/y/925:927, 1/y/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.4 | |
| IL_4V4I_151 | 1/y/933:935, 1/y/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_4V4I_152 | 1/y/953:954, 1/y/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.5 | |
| IL_4V4I_153 | 1/y/993:997, 1/y/1044:1045 | Minor groove platform Not in a motif group | homologous IL_4LFB_039 IL_47078.1 | |
| IL_4V4I_154 | 1/y/1048:1050, 1/y/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.17 | |
| IL_4V4I_155 | 1/y/1050:1056, 1/y/1204:1208 | No text annotation Not in a motif group | homologous IL_5J7L_047 NA | |
| IL_4V4I_156 | 1/y/1057:1059, 1/y/1198:1203 | No text annotation Not in a motif group | ||
| IL_4V4I_157 | 1/y/1060:1061, 1/y/1195:1197 | Single bulged U Not in a motif group | geometric IL_6CZR_156 IL_83039.17 | |
| IL_4V4I_158 | 1/y/1061:1063, 1/y/1193:1195 | No text annotation Not in a motif group | homologous IL_5J7L_050 IL_86319.3 | |
| IL_4V4I_159 | 1/y/1124:1127, 1/y/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.7 | |
| IL_4V4I_160 | 1/y/1129:1132, 1/y/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_4V4I_161 | 1/y/1158:1161, 1/y/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_4V4I_162 | 1/y/1247:1253, 1/y/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4V4I_163 | 1/y/1255:1258, 1/y/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_4V4I_164 | 1/y/1259:1262, 1/y/1273:1276 | No text annotation Not in a motif group | ||
| IL_4V4I_165 | 1/y/1303:1309, 1/y/1328:1334 | No text annotation Not in a motif group | ||
| IL_4V4I_166 | 1/y/1399:1401, 1/y/1501:1504 | No text annotation Not in a motif group | ||
| IL_4V4I_167 | 1/y/1401:1405, 1/y/1496:1501 | No text annotation Not in a motif group | ||
| IL_4V4I_168 | 1/y/1405:1409, 1/y/1491:1496 | No text annotation Not in a motif group | ||
| IL_4V4I_169 | 1/y/1412:1414, 1/y/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.3 | |
| IL_4V4I_170 | 1/y/1416:1419, 1/y/1481:1484 | Double sheared Not in a motif group | homologous IL_6CZR_169 IL_09705.11 | |
| IL_4V4I_171 | 1/y/1431:1435, 1/y/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.2 | |
| IL_4V4I_172 | 1/y/1435:1437, 1/y/1464:1466 | CC cWW Not in a motif group | geometric IL_4KNQ_004 IL_86319.3 | |
| IL_4V4I_173 | 1/y/1440:1447, 1/y/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V4I_011 | Multiple bulged bases | ||
| IL_4V4I_035 | Single bulged A | ||
| IL_4V4I_079 | Major groove platform | ||
| IL_4V4I_122 | Multiple bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V4I_001 | 1/w/30:31, 1/w/474:481, 1/w/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_4V4I_002 | 1/w/55:57, 1/w/70:76, 1/w/110:115 | No text annotation Not in a motif group | ||
| J3_4V4I_003 | 1/w/683:689, 1/w/773:775, 1/w/791:794 | No text annotation Not in a motif group | homologous J3_4WF9_002 NA | |
| J3_4V4I_004 | 1/w/698:700, 1/w/732:736, 1/w/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4V4I_005 | 1/w/1055:1057, 1/w/1081:1087, 1/w/1102:1104 | No text annotation Not in a motif group | homologous J3_8VTW_003 NA | |
| J3_4V4I_006 | 1/w/1298:1303, 1/w/1625:1627, 1/w/1639:1642 | No text annotation Not in a motif group | ||
| J3_4V4I_007 | 1/w/1306:1309, 1/w/1605:1611, 1/w/1620:1622 | No text annotation Not in a motif group | homologous J3_5J7L_042 NA | |
| J3_4V4I_008 | 1/w/1344:1350, 1/w/1381:1385, 1/w/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_4V4I_009 | 1/w/2091:2093, 1/w/2196:2205, 1/w/2219:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_4V4I_010 | 1/w/2295:2297, 1/w/2321:2324, 1/w/2331:2337 | No text annotation Not in a motif group | ||
| J3_4V4I_011 | 1/w/2517:2520, 1/w/2545:2547, 1/w/2561:2567 | No text annotation Not in a motif group | homologous J3_4WF9_009 NA | |
| J3_4V4I_012 | 1/w/2814:2815, 1/w/2831:2837, 1/w/2881:2886 | No text annotation Not in a motif group | ||
| J3_4V4I_013 | 1/x/11:16, 1/x/68:70, 1/x/106:109 | No text annotation Not in a motif group | ||
| J3_4V4I_014 | 1/y/46:47, 1/y/361:366, 1/y/394:395 | No text annotation Not in a motif group | ||
| J3_4V4I_015 | 1/y/586:588, 1/y/651:654, 1/y/754:755 | No text annotation Not in a motif group | homologous J3_6CZR_016 NA | |
| J3_4V4I_016 | 1/y/672:673, 1/y/717:725, 1/y/732:734 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
| J3_4V4I_017 | 1/y/826:829, 1/y/857:861, 1/y/868:874 | No text annotation Not in a motif group | homologous J3_6CZR_018 NA | |
| J3_4V4I_018 | 1/y/943:946, 1/y/1235:1237, 1/y/1337:1340 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_4V4I_019 | 1/y/955:962, 1/y/973:984, 1/y/1221:1225 | No text annotation Not in a motif group | ||
| J3_4V4I_020 | 1/y/990:993, 1/y/1045:1047, 1/y/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_4V4I_021 | 1/y/1003:1006, 1/y/1023:1027, 1/y/1034:1037 | No text annotation Not in a motif group | ||
| J3_4V4I_022 | 1/y/1063:1068, 1/y/1107:1113, 1/y/1187:1193 | No text annotation Not in a motif group | ||
| J3_4V4I_023 | 1/y/1072:1074, 1/y/1083:1087, 1/y/1098:1103 | No text annotation Not in a motif group | ||
| J3_4V4I_024 | 1/y/1116:1118, 1/y/1155:1158, 1/y/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_4V4I_025 | 1/y/1237:1241, 1/y/1296:1303, 1/y/1334:1337 | No text annotation Not in a motif group | homologous J3_5J7L_011 NA |
Problematic loops
No problematic loops
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