HL_4V4I_030

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4V4I|1|w|U|958, 4V4I|1|w|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4I_030 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.4212

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V4I|1|w|C|955
4V4I|1|w|G|956
4V4I|1|w|A|957
4V4I|1|w|U|958
4V4I|1|w|A|959
4V4I|1|w|A|960
4V4I|1|w|C|961
4V4I|1|w|G|962

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain x

5S ribosomal RNA; 5S rRNA