HL_4V4I_057

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases (A, C, G, U)

2250G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4I_057 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.1517

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4I|1|w|C|2248
4V4I|1|w|U|2249
4V4I|1|w|G|2250
4V4I|1|w|G|2251
4V4I|1|w|G|2252
4V4I|1|w|G|2253
4V4I|1|w|C|2254
4V4I|1|w|G|2255
4V4I|1|w|G|2256

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27

Chain z

Transfer RNA; tRNA