HL_4V4I_109

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CAG(H2U)CGG(H2U)AG

Length

10 nucleotides

Bulged bases

4V4I|1|z|C|17, 4V4I|1|z|G|18, 4V4I|1|z|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4I_109 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.2076

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4I|1|z|C|13
4V4I|1|z|A|14
4V4I|1|z|G|15
4V4I|1|z|H2U|16
4V4I|1|z|C|17
4V4I|1|z|G|18
4V4I|1|z|G|19
4V4I|1|z|H2U|20
4V4I|1|z|A|21
4V4I|1|z|G|22

Current chains

Chain z

P-site PHE-tRNA

Nearby chains

Chain E

50S ribosomal protein L5

Chain w

Large subunit ribosomal RNA; LSU rRNA