HL_4V4J_002
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- ACUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59710.2
- Basepair signature
- cWW-bif-R-R-R-R-R
- Number of instances in this motif group
- 31
Unit IDs
4V4J|1|2|A|31
4V4J|1|2|C|32
4V4J|1|2|U|33
4V4J|1|2|G|34
4V4J|1|2|A|35
4V4J|1|2|A|36
4V4J|1|2|A|37
4V4J|1|2|A|38
4V4J|1|2|U|39
Current chains
- Chain 2
- E-site tRNA
Nearby chains
- Chain 3
- MRNA
- Chain h
- 30S ribosomal protein S7
- Chain l
- 30S ribosomal protein S11
- Chain y
- Small subunit ribosomal RNA; SSU rRNA
- Chain z
- Transfer RNA; tRNA
Coloring options: