4V4J Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V4J_001 | 1/2/11:24 | No text annotation | homologous HL_4WT8_218 NA | |
| HL_4V4J_002 | 1/2/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 HL_06059.6 | |
| HL_4V4J_003 | 1/2/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4V8N_145 HL_28252.8 | |
| HL_4V4J_004 | 1/w/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V4J_005 | 1/w/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4V4J_006 | 1/w/123:128 | No text annotation | homologous HL_7A0S_003 HL_82710.2 | |
| HL_4V4J_007 | 1/w/137B:141B | GNRA | geometric HL_8DP3_003 HL_37824.7 | |
| HL_4V4J_008 | 1/w/155:171 | No text annotation | homologous HL_7RQB_005 NA | |
| HL_4V4J_009 | 1/w/194:201 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_4V4J_010 | 1/w/225:230 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_4V4J_011 | 1/w/246:252 | No text annotation | homologous HL_7A0S_008 HL_37369.2 | |
| HL_4V4J_012 | 1/w/270K:270Q | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_4V4J_013 | 1/w/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V4J_014 | 1/w/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.5 | |
| HL_4V4J_015 | 1/w/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4V4J_112 | 1/w/383:391 | No text annotation | ||
| HL_4V4J_017 | 1/w/410:417 | Pseudoknot geometry | homologous HL_4WF9_014 HL_30680.3 | |
| HL_4V4J_018 | 1/w/462:467 | GNRA | homologous HL_7A0S_015 HL_37824.7 | |
| HL_4V4J_019 | 1/w/487:493 | No text annotation | ||
| HL_4V4J_020 | 1/w/544:549 | GNRA | geometric HL_5TBW_036 NA | |
| HL_4V4J_021 | 1/w/564:577 | No text annotation | ||
| HL_4V4J_022 | 1/w/611:617 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_4V4J_023 | 1/w/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V4J_024 | 1/w/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4V4J_025 | 1/w/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_4V4J_026 | 1/w/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V4J_027 | 1/w/779:785 | No text annotation | ||
| HL_4V4J_113 | 1/w/826:831 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_4V4J_029 | 1/w/884:892 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V4J_030 | 1/w/955:962 | GNRA | homologous HL_7A0S_026 HL_37824.7 | |
| HL_4V4J_031 | 1/w/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V4J_032 | 1/w/1065:1073 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_4V4J_033 | 1/w/1092:1099 | No text annotation | homologous HL_7RQB_030 NA | |
| HL_4V4J_034 | 1/w/1171:1178 | No text annotation | geometric HL_7RQB_043 NA | |
| HL_4V4J_035 | 1/w/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V4J_036 | 1/w/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_28252.8 | |
| HL_4V4J_037 | 1/w/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4V4J_038 | 1/w/1363:1368 | GNRA | homologous HL_4WF9_034 HL_37824.7 | |
| HL_4V4J_039 | 1/w/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V4J_040 | 1/w/1450:1461 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_4V4J_041 | 1/w/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_4V4J_042 | 1/w/1533:1538 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_4V4J_043 | 1/w/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4V4J_044 | 1/w/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_89567.2 | |
| HL_4V4J_045 | 1/w/1630B:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V4J_046 | 1/w/1691:1696 | UNCG | geometric HL_4PMI_004 HL_34617.5 | |
| HL_4V4J_047 | 1/w/1727:1733 | No text annotation | ||
| HL_4V4J_048 | 1/w/1752:1756 | No text annotation | homologous HL_7A0S_044 HL_80709.3 | |
| HL_4V4J_049 | 1/w/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_4V4J_050 | 1/w/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V4J_117 | 1/w/1864:1878 | GNRA | homologous HL_9DFE_045 HL_37824.7 | |
| HL_4V4J_052 | 1/w/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V4J_053 | 1/w/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V4J_054 | 1/w/2027:2036 | No text annotation | homologous HL_7A0S_049 HL_61996.2 | |
| HL_4V4J_055 | 1/w/2143:2148 | No text annotation | geometric HL_4V88_198 NA | |
| HL_4V4J_056 | 1/w/2209:2215 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_4V4J_057 | 1/w/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_4V4J_058 | 1/w/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
| HL_4V4J_059 | 1/w/2304:2312 | No text annotation | ||
| HL_4V4J_060 | 1/w/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V4J_061 | 1/w/2355:2362 | GNRA with extra cWW | homologous HL_7A0S_056 HL_04259.3 | |
| HL_4V4J_062 | 1/w/2374:2379 | GNRA | homologous HL_7A0S_057 HL_37824.7 | |
| HL_4V4J_063 | 1/w/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
| HL_4V4J_064 | 1/w/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_4V4J_065 | 1/w/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V4J_066 | 1/w/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V4J_067 | 1/w/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V4J_068 | 1/w/2658:2663 | GNRA related | geometric HL_3OXE_002 HL_04783.2 | |
| HL_4V4J_069 | 1/w/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V4J_070 | 1/w/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V4J_071 | 1/w/2794:2802 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_4V4J_072 | 1/w/2819:2827 | No text annotation | homologous HL_7A0S_067 HL_64690.6 | |
| HL_4V4J_073 | 1/w/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_4V4J_074 | 1/x/38:44 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_4V4J_075 | 1/x/86:90 | GNRA | homologous HL_5TBW_186 NA | |
| HL_4V4J_076 | 1/y/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_4V4J_077 | 1/y/81:88 | GNRA | geometric HL_5J7L_016 HL_37824.7 | |
| HL_4V4J_114 | 1/y/102:103 | No text annotation | homologous HL_4LFB_023 NA | |
| HL_4V4J_079 | 1/y/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_4V4J_080 | 1/y/186G:191A | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_4V4J_081 | 1/y/201:216 | No text annotation | ||
| HL_4V4J_082 | 1/y/259:267 | GNRA related | homologous HL_6CZR_077 NA | |
| HL_4V4J_083 | 1/y/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_4V4J_084 | 1/y/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V4J_085 | 1/y/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4V4J_086 | 1/y/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_4V4J_087 | 1/y/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_4V4J_088 | 1/y/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_4V4J_115 | 1/y/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.7 | |
| HL_4V4J_090 | 1/y/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_4V4J_091 | 1/y/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_4V4J_092 | 1/y/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_4V4J_093 | 1/y/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_4V4J_094 | 1/y/838:848 | No text annotation | ||
| HL_4V4J_096 | 1/y/897:902 | GNRA | homologous HL_6CZR_091 NA | |
| HL_4V4J_097 | 1/y/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V4J_098 | 1/y/1012:1017 | No text annotation | ||
| HL_4V4J_100 | 1/y/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_4V4J_101 | 1/y/1089:1096 | T-loop related | homologous HL_6CZR_096 NA | |
| HL_4V4J_102 | 1/y/1134:1140 | No text annotation | homologous HL_5J7L_025 HL_87954.2 | |
| HL_4V4J_103 | 1/y/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_4V4J_104 | 1/y/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_4V4J_105 | 1/y/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V4J_107 | 1/y/1449:1454 | UNCG | homologous HL_4LFB_031 HL_34617.5 | |
| HL_4V4J_108 | 1/y/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_4V4J_109 | 1/z/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_4V4J_110 | 1/z/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.6 | |
| HL_4V4J_111 | 1/z/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5HR6_003 HL_28252.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V4J_016 | No text annotation | ||
| HL_4V4J_028 | UNCG variation | ||
| HL_4V4J_051 | GNRA with extra cWW | ||
| HL_4V4J_078 | Externally structured | ||
| HL_4V4J_089 | No text annotation | ||
| HL_4V4J_116 | No text annotation | ||
| HL_4V4J_095 | GNRA | ||
| HL_4V4J_099 | No text annotation | ||
| HL_4V4J_106 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V4J_001 | 1/w/24:30, 1/w/510:516 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_4V4J_002 | 1/w/36:37, 1/w/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
| IL_4V4J_003 | 1/w/43:44, 1/w/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_4V4J_004 | 1/w/81:85, 1/w/97:105 | Kink-turn | homologous IL_7A0S_004 IL_94910.1 | |
| IL_4V4J_005 | 1/w/183:184, 1/w/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_4V4J_006 | 1/w/188:194, 1/w/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_4V4J_007 | 1/w/239:245, 1/w/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V4J_170 | 1/w/273:273, 1/w/363:364 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_4V4J_010 | 1/w/273G:278, 1/w/362:363A | No text annotation | ||
| IL_4V4J_011 | 1/w/280:284, 1/w/356:360 | tSH-tHW-tHS | geometric IL_6CZR_145 NA | |
| IL_4V4J_012 | 1/w/288:290, 1/w/350:352 | Isolated non-canonical cWW pair | geometric IL_1RPU_001 IL_87907.2 | |
| IL_4V4J_013 | 1/w/292:295, 1/w/343:348 | No text annotation | ||
| IL_4V4J_014 | 1/w/481:484, 1/w/496:509 | No text annotation | geometric IL_7A0S_009 IL_81516.2 | |
| IL_4V4J_171 | 1/w/606:609, 1/w/618:622 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.2 | |
| IL_4V4J_016 | 1/w/672:674, 1/w/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_4V4J_017 | 1/w/674:678, 1/w/799:806 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_54041.2 | |
| IL_4V4J_018 | 1/w/697:698, 1/w/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4V4J_019 | 1/w/702:703, 1/w/728:730 | Single bulged G | geometric IL_4WF9_023 IL_00225.13 | |
| IL_4V4J_020 | 1/w/703:707, 1/w/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4V4J_021 | 1/w/738:741, 1/w/756:758 | Major groove platform with extra cWW | homologous IL_7A0S_019 IL_51387.2 | |
| IL_4V4J_172 | 1/w/775:777, 1/w/787:791 | No text annotation | geometric IL_8VTW_022 NA | |
| IL_4V4J_023 | 1/w/837:838, 1/w/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_4V4J_024 | 1/w/844:846, 1/w/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4V4J_025 | 1/w/846:850, 1/w/928:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4V4J_026 | 1/w/858:862, 1/w/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_4V4J_027 | 1/w/862:863, 1/w/913:915 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_4V4J_028 | 1/w/864:868, 1/w/909:912 | No text annotation | homologous IL_9DFE_028 IL_26222.2 | |
| IL_4V4J_029 | 1/w/875:877, 1/w/900:902 | Isolated tHS basepair with bulges | geometric IL_1L9A_004 IL_85599.2 | |
| IL_4V4J_173 | 1/w/875:879, 1/w/898:902 | No text annotation | ||
| IL_4V4J_030 | 1/w/877:879, 1/w/898:900 | No text annotation | ||
| IL_4V4J_031 | 1/w/880:881, 1/w/895:897 | Single bulged A | homologous IL_8VTW_032 NA | |
| IL_4V4J_032 | 1/w/952:954, 1/w/963:965 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_87907.2 | |
| IL_4V4J_033 | 1/w/994:996, 1/w/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_4V4J_034 | 1/w/998:1002, 1/w/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_4V4J_035 | 1/w/1004:1011, 1/w/1150:1151 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_4V4J_036 | 1/w/1011:1013, 1/w/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_4V4J_037 | 1/w/1018:1024, 1/w/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_4V4J_038 | 1/w/1024:1030, 1/w/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V4J_039 | 1/w/1031:1034, 1/w/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4V4J_040 | 1/w/1043:1051, 1/w/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4V4J_174 | 1/w/1059:1062, 1/w/1076:1079 | No text annotation | homologous IL_5J7L_285 IL_92446.2 | |
| IL_4V4J_042 | 1/w/1087:1091, 1/w/1100:1102 | No text annotation | homologous IL_7RQB_044 NA | |
| IL_4V4J_043 | 1/w/1197:1198, 1/w/1247:1249 | Single bulged G | geometric IL_5J7L_001 IL_00225.13 | |
| IL_4V4J_044 | 1/w/1202:1206, 1/w/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V4J_045 | 1/w/1208:1215, 1/w/1234:1238 | Kink-turn | homologous IL_7A0S_043 IL_70923.9 | |
| IL_4V4J_046 | 1/w/1219:1221, 1/w/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V4J_047 | 1/w/1262:1269, 1/w/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V4J_048 | 1/w/1310:1313, 1/w/1603:1604 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_50694.7 | |
| IL_4V4J_049 | 1/w/1319:1323, 1/w/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V4J_050 | 1/w/1351:1355, 1/w/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V4J_051 | 1/w/1357:1361, 1/w/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_17136.7 | |
| IL_4V4J_052 | 1/w/1415:1416, 1/w/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4V4J_053 | 1/w/1417:1421, 1/w/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V4J_189 | 1/w/1433:1435, 1/w/1557:1560 | No text annotation | ||
| IL_4V4J_055 | 1/w/1437:1440, 1/w/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V4J_056 | 1/w/1448:1449, 1/w/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4V4J_057 | 1/w/1469:1473, 1/w/1520:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4V4J_058 | 1/w/1481:1483, 1/w/1506:1512 | No text annotation | homologous IL_9DFE_060 IL_46086.1 | |
| IL_4V4J_059 | 1/w/1489:1491, 1/w/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4V4J_060 | 1/w/1526:1527, 1/w/1544:1546B | No text annotation | ||
| IL_4V4J_061 | 1/w/1527:1531, 1/w/1540:1544 | No text annotation | ||
| IL_4V4J_062 | 1/w/1651:1656, 1/w/2004:2006 | No text annotation | homologous IL_7A0S_059 IL_12566.4 | |
| IL_4V4J_063 | 1/w/1663:1665, 1/w/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_4V4J_064 | 1/w/1666:1669, 1/w/1993:1994 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 IL_50694.7 | |
| IL_4V4J_175 | 1/w/1666:1674, 1/w/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4V4J_065 | 1/w/1669:1674, 1/w/1990:1993 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_4V4J_066 | 1/w/1686:1691, 1/w/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_4V4J_067 | 1/w/1770:1771, 1/w/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V4J_068 | 1/w/1798:1804, 1/w/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V4J_069 | 1/w/1837:1840, 1/w/1902:1903 | No text annotation | homologous IL_4WF9_070 NA | |
| IL_4V4J_070 | 1/w/1841:1842, 1/w/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_4V4J_071 | 1/w/1846:1849, 1/w/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V4J_072 | 1/w/1851:1855, 1/w/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_4V4J_073 | 1/w/1856:1860, 1/w/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V4J_074 | 1/w/1933:1934, 1/w/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_4V4J_075 | 1/w/1934:1945, 1/w/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_4V4J_076 | 1/w/2050:2052, 1/w/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_4V4J_077 | 1/w/2054:2056, 1/w/2612:2615 | No text annotation | homologous IL_4WF9_079 IL_83389.2 | |
| IL_4V4J_078 | 1/w/2067:2069, 1/w/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V4J_079 | 1/w/2070:2071, 1/w/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4V4J_080 | 1/w/2081:2083, 1/w/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V4J_081 | 1/w/2085:2087, 1/w/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V4J_082 | 1/w/2108:2110, 1/w/2179:2181 | Isolated non-canonical cWW pair | geometric IL_4KZD_003 IL_28037.2 | |
| IL_4V4J_083 | 1/w/2110:2120, 1/w/2178:2179 | No text annotation | ||
| IL_4V4J_084 | 1/w/2124:2127, 1/w/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4V4J_085 | 1/w/2129:2136, 1/w/2155:2159 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_4V4J_086 | 1/w/2297:2299, 1/w/2317:2321 | Isolated tHS basepair with bulges | homologous IL_4WF9_086 IL_61476.2 | |
| IL_4V4J_087 | 1/w/2350:2353, 1/w/2364:2367 | Double sheared | homologous IL_7A0S_081 IL_09705.15 | |
| IL_4V4J_088 | 1/w/2401:2403, 1/w/2414:2415 | Single bulged U | homologous IL_4WF9_088 IL_89505.4 | |
| IL_4V4J_089 | 1/w/2454:2455, 1/w/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4V4J_090 | 1/w/2457:2459, 1/w/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_4V4J_091 | 1/w/2459:2461, 1/w/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.2 | |
| IL_4V4J_092 | 1/w/2466:2470, 1/w/2480:2484 | Triple sheared | homologous IL_7A0S_087 IL_17948.2 | |
| IL_4V4J_093 | 1/w/2507:2508, 1/w/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4V4J_094 | 1/w/2510:2512, 1/w/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_07785.1 | |
| IL_4V4J_095 | 1/w/2512:2513, 1/w/2571:2574 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_4V4J_096 | 1/w/2522:2523, 1/w/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
| IL_4V4J_097 | 1/w/2591:2592, 1/w/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.6 | |
| IL_4V4J_098 | 1/w/2636:2640, 1/w/2774:2782 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.3 | |
| IL_4V4J_099 | 1/w/2652:2658, 1/w/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_4V4J_100 | 1/w/2680:2684, 1/w/2725:2727 | C-loop | homologous IL_7A0S_095 IL_63596.11 | |
| IL_4V4J_101 | 1/w/2687:2691, 1/w/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V4J_177 | 1/w/2695:2696, 1/w/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_4V4J_103 | 1/w/2737:2742, 1/w/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_4V4J_104 | 1/w/2838:2839, 1/w/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V4J_105 | 1/w/2843:2845, 1/w/2871:2874 | Decoding loop related | homologous IL_7A0S_100 IL_31531.3 | |
| IL_4V4J_106 | 1/w/2847:2852, 1/w/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_4V4J_107 | 1/x/17:18, 1/x/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.6 | |
| IL_4V4J_108 | 1/x/23:28, 1/x/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_4V4J_109 | 1/x/30:31, 1/x/51:54 | No text annotation | ||
| IL_4V4J_110 | 1/x/34:38, 1/x/44:48 | Symmetric double minor groove platform | homologous IL_4WF9_115 IL_58103.11 | |
| IL_4V4J_111 | 1/x/71:79, 1/x/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_4V4J_112 | 1/y/30:32, 1/y/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_4V4J_113 | 1/y/44:45, 1/y/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_4V4J_114 | 1/y/47:52, 1/y/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_4V4J_115 | 1/y/54:56, 1/y/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4V4J_179 | 1/y/63:66, 1/y/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_4V4J_116 | 1/y/67:69, 1/y/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4V4J_117 | 1/y/129A:131, 1/y/231:232 | Minor groove platform | geometric IL_4R4V_001 IL_51454.3 | |
| IL_4V4J_118 | 1/y/132:136, 1/y/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V4J_120 | 1/y/148:153, 1/y/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4V4J_121 | 1/y/186A:186C, 1/y/191E:191G | Isolated non-canonical cWW pair | homologous IL_6CZR_122 NA | |
| IL_4V4J_122 | 1/y/242:247, 1/y/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_4V4J_123 | 1/y/249:252, 1/y/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4V4J_124 | 1/y/292:293, 1/y/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_4V4J_180 | 1/y/367:369, 1/y/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4V4J_126 | 1/y/371:375, 1/y/389:390 | C-loop | homologous IL_6CZR_127 NA | |
| IL_4V4J_127 | 1/y/375:376, 1/y/387:389 | Single bulged G | geometric IL_4LFB_016 IL_00225.13 | |
| IL_4V4J_181 | 1/y/409:416, 1/y/427:433 | No text annotation | homologous IL_6CZR_359 NA | |
| IL_4V4J_129 | 1/y/446:450, 1/y/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_88269.4 | |
| IL_4V4J_130 | 1/y/450:455, 1/y/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V4J_131 | 1/y/504:511, 1/y/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4V4J_132 | 1/y/515:521, 1/y/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_4V4J_133 | 1/y/569:575, 1/y/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_4V4J_134 | 1/y/580:584, 1/y/757:761 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_4V4J_135 | 1/y/594:596, 1/y/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4V4J_136 | 1/y/597:598, 1/y/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_4V4J_137 | 1/y/605:612, 1/y/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4V4J_182 | 1/y/654:655, 1/y/751:754 | Major groove platform; stack outside cWW | geometric IL_4V9F_008 IL_50694.7 | |
| IL_4V4J_139 | 1/y/657:658, 1/y/747:749 | Major groove platform | homologous IL_6CZR_140 NA | |
| IL_4V4J_140 | 1/y/662:666, 1/y/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4V4J_141 | 1/y/673:677, 1/y/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_4V4J_142 | 1/y/683:688, 1/y/699:707 | No text annotation | homologous IL_6CZR_143 NA | |
| IL_4V4J_143 | 1/y/774:778, 1/y/804:805 | Left turn | homologous IL_6CZR_144 NA | |
| IL_4V4J_144 | 1/y/779:783, 1/y/799:803 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
| IL_4V4J_183 | 1/y/887:894, 1/y/905:910 | No text annotation | homologous IL_6CZR_364 NA | |
| IL_4V4J_146 | 1/y/922:923, 1/y/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.6 | |
| IL_4V4J_147 | 1/y/925:927, 1/y/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_4V4J_148 | 1/y/933:935, 1/y/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_4V4J_149 | 1/y/953:954, 1/y/1226:1228 | Minor groove platform | homologous IL_5J7L_042 IL_51454.3 | |
| IL_4V4J_150 | 1/y/993:997, 1/y/1044:1045 | Minor groove platform | geometric IL_6CZR_151 NA | |
| IL_4V4J_151 | 1/y/1048:1050, 1/y/1208:1209 | No text annotation | homologous IL_6CZR_152 NA | |
| IL_4V4J_184 | 1/y/1052:1056, 1/y/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V4J_185 | 1/y/1057:1058, 1/y/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4V4J_154 | 1/y/1060:1061, 1/y/1195:1197 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_4V4J_155 | 1/y/1061:1063, 1/y/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5VCI_001 IL_28037.2 | |
| IL_4V4J_156 | 1/y/1124:1127, 1/y/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_4V4J_157 | 1/y/1129:1132, 1/y/1142:1143 | Minor groove platform | homologous IL_4LFB_049 IL_15052.4 | |
| IL_4V4J_158 | 1/y/1158:1161, 1/y/1175:1181 | No text annotation | homologous IL_4LFB_050 IL_42032.1 | |
| IL_4V4J_159 | 1/y/1247:1253, 1/y/1284:1290 | No text annotation | homologous IL_6CZR_160 NA | |
| IL_4V4J_160 | 1/y/1255:1258, 1/y/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4V4J_161 | 1/y/1259:1262, 1/y/1273:1276 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_4V4J_162 | 1/y/1303:1308, 1/y/1329:1334 | No text annotation | homologous IL_5J7L_057 IL_85536.2 | |
| IL_4V4J_163 | 1/y/1399:1401, 1/y/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_4V4J_186 | 1/y/1401:1404, 1/y/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
| IL_4V4J_187 | 1/y/1405:1407, 1/y/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_4V4J_188 | 1/y/1407:1409, 1/y/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
| IL_4V4J_165 | 1/y/1412:1414, 1/y/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V4J_166 | 1/y/1416:1419, 1/y/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_4V4J_167 | 1/y/1431:1435, 1/y/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_4V4J_168 | 1/y/1435:1437, 1/y/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4V83_235 IL_07785.1 | |
| IL_4V4J_169 | 1/y/1440:1447, 1/y/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V4J_008 | Multiple bulged bases | ||
| IL_4V4J_009 | No text annotation | ||
| IL_4V4J_015 | No text annotation | ||
| IL_4V4J_022 | No text annotation | ||
| IL_4V4J_041 | No text annotation | ||
| IL_4V4J_054 | No text annotation | ||
| IL_4V4J_176 | No text annotation | ||
| IL_4V4J_102 | No text annotation | ||
| IL_4V4J_178 | No text annotation | ||
| IL_4V4J_119 | Multiple bulged bases | ||
| IL_4V4J_125 | Other IL | ||
| IL_4V4J_128 | No text annotation | ||
| IL_4V4J_138 | No text annotation | ||
| IL_4V4J_145 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_4V4J_152 | No text annotation | ||
| IL_4V4J_153 | No text annotation | ||
| IL_4V4J_164 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V4J_001 | 1/w/30:31, 1/w/474:481, 1/w/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_4V4J_027 | 1/w/30:31, 1/w/474:484, 1/w/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_4V4J_028 | 1/w/32:35, 1/w/445:461, 1/w/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_4V4J_002 | 1/w/56:57, 1/w/70:76, 1/w/110:114 | No text annotation | homologous J3_7A0S_002 J3_35667.2 | |
| J3_4V4J_029 | 1/w/269:270, 1/w/270:271, 1/w/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4V4J_004 | 1/w/683:689, 1/w/773:775, 1/w/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_4V4J_005 | 1/w/698:700, 1/w/732:736, 1/w/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V4J_006 | 1/w/1055:1057, 1/w/1081:1087, 1/w/1102:1104 | No text annotation | homologous J3_5J7L_040 J3_28621.5 | |
| J3_4V4J_007 | 1/w/1298:1303, 1/w/1625:1627, 1/w/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V4J_008 | 1/w/1306:1309, 1/w/1605:1611, 1/w/1620:1622 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
| J3_4V4J_009 | 1/w/1344:1350, 1/w/1381:1385, 1/w/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_4V4J_030 | 1/w/1424:1429, 1/w/1564:1565, 1/w/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_4V4J_010 | 1/w/2091:2093, 1/w/2196:2205, 1/w/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V4J_031 | 1/w/2282:2284, 1/w/2384:2395, 1/w/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_4V4J_011 | 1/w/2295:2297, 1/w/2321:2323, 1/w/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V4J_012 | 1/w/2517:2520, 1/w/2545:2547, 1/w/2561:2567 | No text annotation | homologous J3_9DFE_017 J3_32601.5 | |
| J3_4V4J_013 | 1/w/2814:2815, 1/w/2831:2836, 1/w/2882:2886 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
| J3_4V4J_032 | 1/x/11:16, 1/x/68:69, 1/x/107:109 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_4V4J_015 | 1/y/46:47, 1/y/361:366, 1/y/394:395 | No text annotation | ||
| J3_4V4J_016 | 1/y/586:588, 1/y/651:654, 1/y/754:755 | No text annotation | homologous J3_6CZR_016 NA | |
| J3_4V4J_033 | 1/y/586:588, 1/y/651:655, 1/y/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4V4J_017 | 1/y/672:673, 1/y/717:725, 1/y/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4V4J_018 | 1/y/826:829, 1/y/857:861, 1/y/868:874 | No text annotation | homologous J3_6CZR_018 NA | |
| J3_4V4J_035 | 1/y/936:939, 1/y/1344:1350, 1/y/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V4J_019 | 1/y/943:946, 1/y/1235:1237, 1/y/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_4V4J_020 | 1/y/955:962, 1/y/973:984, 1/y/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4V4J_021 | 1/y/990:993, 1/y/1045:1047, 1/y/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4V4J_036 | 1/y/990:997, 1/y/1044:1047, 1/y/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4V4J_022 | 1/y/1003:1006, 1/y/1023:1027, 1/y/1034:1037 | No text annotation | ||
| J3_4V4J_023 | 1/y/1063:1068, 1/y/1107:1113, 1/y/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4V4J_024 | 1/y/1073:1074, 1/y/1083:1086, 1/y/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_4V4J_025 | 1/y/1116:1118, 1/y/1155:1158, 1/y/1181:1184 | No text annotation | homologous J3_4LFB_008 J3_82365.4 | |
| J3_4V4J_037 | 1/y/1116:1118, 1/y/1155:1161, 1/y/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4V4J_026 | 1/y/1237:1241, 1/y/1296:1303, 1/y/1334:1337 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
| J4_4V4J_001 | 1/2/7:10, 1/2/25:27, 1/2/43:49, 1/2/65:66 | No text annotation | homologous J4_6UGG_002 J4_70449.28 | |
| J4_4V4J_002 | 1/w/268:269, 1/w/370:375, 1/w/399:406, 1/w/421:424 | No text annotation | homologous J4_7A0S_001 J4_45801.6 | |
| J4_4V4J_003 | 1/w/297:301, 1/w/316:319, 1/w/323:325, 1/w/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_4V4J_004 | 1/w/601:604, 1/w/624:628, 1/w/635:638, 1/w/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4V4J_005 | 1/w/1270:1276, 1/w/1294:1295, 1/w/1645:1648, 1/w/2009:2010 | No text annotation | homologous J4_7A0S_004 J4_64571.5 | |
| J4_4V4J_006 | 1/w/1310:1314, 1/w/1338:1343, 1/w/1404:1405, 1/w/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4V4J_007 | 1/w/1313:1314, 1/w/1338:1343, 1/w/1404:1405, 1/w/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4V4J_008 | 1/w/1444:1445, 1/w/1466:1467, 1/w/1525:1526, 1/w/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4V4J_009 | 1/w/1772:1776, 1/w/1788:1792, 1/w/1827:1830, 1/w/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4V4J_010 | 1/w/1833:1835, 1/w/1905:1906, 1/w/1924:1933, 1/w/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V4J_011 | 1/w/2285:2289, 1/w/2343:2347, 1/w/2370:2372, 1/w/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_4V4J_012 | 1/w/2643:2646, 1/w/2674:2676, 1/w/2731:2735, 1/w/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_4V4J_013 | 1/y/115:122, 1/y/239:240, 1/y/286:289, 1/y/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4V4J_017 | 1/y/142:144, 1/y/178:183, 1/y/194:198, 1/y/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V4J_015 | 1/y/575:577, 1/y/764:769, 1/y/810:821, 1/y/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4V4J_018 | 1/z/7:10, 1/z/25:27, 1/z/43:49, 1/z/65:66 | tRNA junction | homologous J4_3WQY_001 J4_70449.28 | |
| J5_4V4J_001 | 1/w/47:54, 1/w/116:121, 1/w/130:131, 1/w/148:150, 1/w/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4V4J_002 | 1/w/268:270, 1/w/270:271, 1/w/366:375, 1/w/399:406, 1/w/421:424 | No text annotation | ||
| J5_4V4J_003 | 1/w/531:533, 1/w/560:564, 1/w/577:579, 1/w/1261:1262, 1/w/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V4J_004 | 1/w/584:589, 1/w/668:671, 1/w/809:812, 1/w/1195:1196, 1/w/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4V4J_005 | 1/w/1674:1682, 1/w/1706:1707, 1/w/1751:1752, 1/w/1756:1764, 1/w/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4V4J_006 | 1/w/2056:2064, 1/w/2446:2454, 1/w/2498:2506, 1/w/2583:2588, 1/w/2606:2612 | No text annotation | ||
| J5_4V4J_007 | 1/w/2074:2077, 1/w/2243:2246, 1/w/2258:2259, 1/w/2281:2282, 1/w/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.1 | |
| J5_4V4J_010 | 1/y/36:39, 1/y/403:406, 1/y/436:442, 1/y/492:500, 1/y/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V4J_009 | 1/y/58:61, 1/y/106:113, 1/y/314:316, 1/y/337:339, 1/y/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J6_4V4J_001 | 1/w/45:46, 1/w/179:183, 1/w/214:224, 1/w/231:235, 1/w/262:266, 1/w/426:433 | No text annotation | ||
| J6_4V4J_002 | 1/w/2074:2077, 1/w/2243:2246, 1/w/2258:2259, 1/w/2281:2284, 1/w/2384:2395, 1/w/2421:2435 | No text annotation | ||
| J7_4V4J_001 | 1/w/817:822, 1/w/835:836, 1/w/943:946, 1/w/971:976, 1/w/987:991, 1/w/1163:1164, 1/w/1185:1190 | No text annotation | ||
| J8_4V4J_001 | 1/w/8:15, 1/w/525:531, 1/w/2018:2023, 1/w/2040:2043, 1/w/2625:2630, 1/w/2788:2791, 1/w/2805:2811, 1/w/2889:2895 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V4J_003 | No text annotation | ||
| J3_4V4J_014 | No text annotation | ||
| J3_4V4J_034 | No text annotation | ||
| J4_4V4J_014 | No text annotation | ||
| J4_4V4J_016 | No text annotation | ||
| J5_4V4J_008 | No text annotation |
Coloring options: