HL_4V4J_016
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GUUCGUGGAGC
- Length
- 11 nucleotides
- Bulged bases
- 4V4J|1|w|G|386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4J_016 not in the Motif Atlas
- Homologous match to HL_7RQB_013
- Geometric discrepancy: 0.2397
- The information below is about HL_7RQB_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91503.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V4J|1|w|G|382
4V4J|1|w|U|383
4V4J|1|w|U|384
4V4J|1|w|C|385
4V4J|1|w|G|386
4V4J|1|w|U|387
4V4J|1|w|G|388
4V4J|1|w|G|389
4V4J|1|w|A|390
4V4J|1|w|G|391
4V4J|1|w|C|392
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain J
- 50S ribosomal protein L15
- Chain V
- LSU ribosomal protein L28P
Coloring options: