HL_4V4J_024

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_024 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.2971

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V4J|1|w|C|641
4V4J|1|w|G|642
4V4J|1|w|A|643
4V4J|1|w|A|644
4V4J|1|w|C|645
4V4J|1|w|A|646
4V4J|1|w|G|647

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain a

50S ribosomal protein L35