HL_4V4J_025
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GGUGAGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4J_025 not in the Motif Atlas
- Homologous match to HL_5J7L_154
- Geometric discrepancy: 0.319
- The information below is about HL_5J7L_154
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
4V4J|1|w|G|712
4V4J|1|w|G|713
4V4J|1|w|U|714
4V4J|1|w|G|715
4V4J|1|w|A|716
4V4J|1|w|G|717
4V4J|1|w|A|718
4V4J|1|w|C|719
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain p
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S17
- Chain y
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: