HL_4V4J_032

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

4V4J|1|w|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_032 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2569

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V4J|1|w|U|1065
4V4J|1|w|U|1066
4V4J|1|w|A|1067
4V4J|1|w|G|1068
4V4J|1|w|A|1069
4V4J|1|w|A|1070
4V4J|1|w|G|1071
4V4J|1|w|C|1072
4V4J|1|w|A|1073

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains