HL_4V4J_039

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4V4J|1|w|U|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_039 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.3748

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V4J|1|w|G|1389
4V4J|1|w|U|1390
4V4J|1|w|U|1391
4V4J|1|w|A|1392
4V4J|1|w|A|1393
4V4J|1|w|U|1394
4V4J|1|w|A|1395
4V4J|1|w|U|1396
4V4J|1|w|U|1397
4V4J|1|w|C|1398

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain R

50S ribosomal protein L23