HL_4V4J_057

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V4J|1|w|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_057 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.2061

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V4J|1|w|C|2248
4V4J|1|w|U|2249
4V4J|1|w|G|2250
4V4J|1|w|G|2251
4V4J|1|w|G|2252
4V4J|1|w|G|2253
4V4J|1|w|C|2254
4V4J|1|w|G|2255
4V4J|1|w|G|2256

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27

Chain z

Transfer RNA; tRNA