HL_4V4J_071

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CGUCAAG

Length

7 nucleotides

Bulged bases

4V4J|1|w|C|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_071 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3471

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V4J|1|w|C|2794
4V4J|1|w|G|2795
4V4J|1|w|U|2797
4V4J|1|w|C|2798
4V4J|1|w|A|2799
4V4J|1|w|A|2801
4V4J|1|w|G|2802

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains