HL_4V4J_082
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 4V4J|1|y|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4J_082 not in the Motif Atlas
- Homologous match to HL_6CZR_077
- Geometric discrepancy: 0.4799
- The information below is about HL_6CZR_077
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4V4J|1|y|G|259
4V4J|1|y|G|260
4V4J|1|y|U|261
4V4J|1|y|A|262
4V4J|1|y|A|263
4V4J|1|y|U|264
4V4J|1|y|G|265
4V4J|1|y|G|266
4V4J|1|y|C|267
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain r
- 30S ribosomal protein S17
- Chain u
- 30S ribosomal protein S20
Coloring options: