HL_4V4J_085

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V4J|1|y|A|344, 4V4J|1|y|C|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_085 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.2918

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

4V4J|1|y|C|342
4V4J|1|y|U|343
4V4J|1|y|A|344
4V4J|1|y|C|345
4V4J|1|y|G|346
4V4J|1|y|G|347

Current chains

Chain y

16S RNA

Nearby chains

Chain I

50S ribosomal protein L14

Chain N

50S ribosomal protein L19