HL_4V4J_087

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V4J|1|y|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_087 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.4031

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

4V4J|1|y|C|419
4V4J|1|y|U|420
4V4J|1|y|U|421
4V4J|1|y|C|422
4V4J|1|y|G|423
4V4J|1|y|G|424

Current chains

Chain y

16S RNA

Nearby chains

Chain d

30S ribosomal protein S3

Chain e

30S ribosomal protein S4