HL_4V4J_095

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_095 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.226

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V4J|1|y|C|862
4V4J|1|y|U|863
4V4J|1|y|A|864
4V4J|1|y|A|865
4V4J|1|y|C|866
4V4J|1|y|G|867

Current chains

Chain y

16S RNA

Nearby chains

Chain 3

MRNA

Chain f

30S ribosomal protein S5

Chain i

30S ribosomal protein S8