HL_4V4J_105
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- CUGCAACCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4J_105 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.3646
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V4J|1|y|C|1314
4V4J|1|y|U|1315
4V4J|1|y|G|1316
4V4J|1|y|C|1317
4V4J|1|y|A|1318
4V4J|1|y|A|1319
4V4J|1|y|C|1320
4V4J|1|y|C|1321
4V4J|1|y|C|1322
4V4J|1|y|G|1323
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain n
- 30S ribosomal protein S13
- Chain o
- 30S ribosomal protein S14 type Z
- Chain t
- 30S ribosomal protein S19
Coloring options: